Variant report

Variant	rs12031035
Chromosome Location	chr1:76631858-76631859
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10873868	0.87[EUR][1000 genomes]
rs11162094	0.89[EUR][1000 genomes]
rs11162100	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11584719	0.93[EUR][1000 genomes]
rs12080978	0.90[EUR][1000 genomes]
rs12083141	0.83[EUR][1000 genomes]
rs12085592	0.87[EUR][1000 genomes]
rs12086586	0.84[EUR][1000 genomes]
rs12089339	0.87[EUR][1000 genomes]
rs12089419	0.87[EUR][1000 genomes]
rs12089425	0.87[EUR][1000 genomes]
rs12136476	0.89[EUR][1000 genomes]
rs12136538	0.88[EUR][1000 genomes]
rs12138879	0.89[EUR][1000 genomes]
rs12138975	0.89[EUR][1000 genomes]
rs12139114	0.89[EUR][1000 genomes]
rs1318243	0.87[EUR][1000 genomes]
rs1684945	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2631794	0.82[EUR][1000 genomes]
rs2631795	0.85[EUR][1000 genomes]
rs2706179	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2706180	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28485639	0.89[EUR][1000 genomes]
rs376878	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs409936	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs411756	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs417738	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs417932	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs432956	0.87[EUR][1000 genomes]
rs592872	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs638947	0.86[EUR][1000 genomes]
rs7512081	0.88[EUR][1000 genomes]
rs7514776	0.87[EUR][1000 genomes]
rs7521939	0.87[EUR][1000 genomes]
rs7528649	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7528680	0.87[EUR][1000 genomes]
rs7528766	0.87[EUR][1000 genomes]
rs7532337	0.87[EUR][1000 genomes]
rs7534087	0.88[EUR][1000 genomes]
rs7536455	0.87[EUR][1000 genomes]
rs7540069	0.87[EUR][1000 genomes]
rs7552671	0.87[EUR][1000 genomes]
rs923244	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs923245	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76619800-76646400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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