Variant report

Variant	rs2706179
Chromosome Location	chr1:76657985-76657986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10493585	0.94[ASN][1000 genomes]
rs10493586	0.94[ASN][1000 genomes]
rs10493587	0.94[ASN][1000 genomes]
rs10873868	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11162094	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11162100	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584719	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12031035	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12080978	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12083141	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12085592	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12086586	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12089339	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12089419	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12089425	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12136476	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12136538	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12138879	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12138975	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12139114	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1318243	0.84[EUR][1000 genomes]
rs1684945	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17098319	0.94[ASN][1000 genomes]
rs17098322	0.94[ASN][1000 genomes]
rs17098326	0.94[ASN][1000 genomes]
rs17098328	0.94[ASN][1000 genomes]
rs17098330	0.94[ASN][1000 genomes]
rs17098332	0.94[ASN][1000 genomes]
rs17098335	0.94[ASN][1000 genomes]
rs17098336	0.94[ASN][1000 genomes]
rs17098338	0.94[ASN][1000 genomes]
rs17098341	0.94[ASN][1000 genomes]
rs17098353	0.94[ASN][1000 genomes]
rs17668894	0.94[ASN][1000 genomes]
rs17669251	0.94[ASN][1000 genomes]
rs2087137	0.94[ASN][1000 genomes]
rs2631794	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2631795	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2706180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485639	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs376878	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs409936	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs411756	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs417738	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs417932	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs432956	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57736626	0.94[ASN][1000 genomes]
rs592872	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59372100	0.94[ASN][1000 genomes]
rs59542062	0.94[ASN][1000 genomes]
rs60006887	0.94[ASN][1000 genomes]
rs60056501	0.94[ASN][1000 genomes]
rs61066589	0.94[ASN][1000 genomes]
rs638947	0.92[EUR][1000 genomes]
rs66498881	0.94[ASN][1000 genomes]
rs66533016	0.94[ASN][1000 genomes]
rs66534155	0.94[ASN][1000 genomes]
rs66662371	0.94[ASN][1000 genomes]
rs66803626	0.94[ASN][1000 genomes]
rs66821894	0.94[ASN][1000 genomes]
rs66981034	0.94[ASN][1000 genomes]
rs67665131	0.94[ASN][1000 genomes]
rs67740172	0.94[ASN][1000 genomes]
rs67877759	0.94[ASN][1000 genomes]
rs68000528	0.94[ASN][1000 genomes]
rs68053488	0.94[ASN][1000 genomes]
rs68091079	0.94[ASN][1000 genomes]
rs72674492	0.94[ASN][1000 genomes]
rs72675907	0.94[ASN][1000 genomes]
rs72675908	0.94[ASN][1000 genomes]
rs72675909	0.94[ASN][1000 genomes]
rs72675910	0.94[ASN][1000 genomes]
rs72675912	0.94[ASN][1000 genomes]
rs72996565	0.94[ASN][1000 genomes]
rs72996566	0.94[ASN][1000 genomes]
rs72996595	0.94[ASN][1000 genomes]
rs7512081	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7514776	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7521939	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7528649	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7528680	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7528766	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7532337	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7534087	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7536455	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7540069	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7552671	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs923244	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs923245	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76646600-76658000	Weak transcription	Fetal Stomach	stomach
2	chr1:76647000-76665600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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