Variant report
| Variant | rs12032695 |
|---|---|
| Chromosome Location | chr1:166625261-166625262 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234984 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10047082 | 0.85[ASN][1000 genomes] |
| rs10494466 | 0.85[ASN][1000 genomes] |
| rs10800253 | 0.86[ASN][1000 genomes] |
| rs10918554 | 0.85[ASN][1000 genomes] |
| rs11585016 | 0.85[ASN][1000 genomes] |
| rs12022093 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12022833 | 0.84[ASN][1000 genomes] |
| rs12082938 | 0.85[ASN][1000 genomes] |
| rs12406568 | 0.85[ASN][1000 genomes] |
| rs3904701 | 0.86[ASN][1000 genomes] |
| rs4068473 | 0.86[ASN][1000 genomes] |
| rs4090281 | 0.85[ASN][1000 genomes] |
| rs4393133 | 0.86[ASN][1000 genomes] |
| rs563206 | 0.86[ASN][1000 genomes] |
| rs566841 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916491 | chr1:166000783-166948513 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | esv2757759 | chr1:166491879-166650985 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2758975 | chr1:166491879-166650985 | ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
