Variant report

Variant	rs12022833
Chromosome Location	chr1:166625188-166625189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166624773..166627702-chr1:166632092..166634558,2	K562	blood:
2	chr1:166624683..166630041-chr1:166630762..166637027,8	K562	blood:

Variant related genes	Relation type
ENSG00000234984	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10047082	0.95[ASN][1000 genomes]
rs10494466	0.95[ASN][1000 genomes]
rs10800253	0.96[ASN][1000 genomes]
rs10800256	0.82[ASN][1000 genomes]
rs10918553	0.89[ASN][1000 genomes]
rs10918554	0.95[ASN][1000 genomes]
rs11585016	0.95[ASN][1000 genomes]
rs12032695	0.84[ASN][1000 genomes]
rs12074816	0.83[ASN][1000 genomes]
rs12074860	0.83[ASN][1000 genomes]
rs12082938	0.95[ASN][1000 genomes]
rs12406568	0.95[ASN][1000 genomes]
rs1631056	0.84[ASN][1000 genomes]
rs17472904	0.84[ASN][1000 genomes]
rs3125820	0.84[ASN][1000 genomes]
rs34311259	0.85[ASN][1000 genomes]
rs3904700	0.83[ASN][1000 genomes]
rs3904701	0.96[ASN][1000 genomes]
rs4068473	0.96[ASN][1000 genomes]
rs4090281	0.95[ASN][1000 genomes]
rs4320765	0.82[ASN][1000 genomes]
rs4393133	0.96[ASN][1000 genomes]
rs473746	0.82[ASN][1000 genomes]
rs475264	0.84[ASN][1000 genomes]
rs482782	0.83[ASN][1000 genomes]
rs482850	0.83[ASN][1000 genomes]
rs483138	0.82[ASN][1000 genomes]
rs484070	0.82[ASN][1000 genomes]
rs500568	0.82[ASN][1000 genomes]
rs503960	0.82[ASN][1000 genomes]
rs505012	0.80[ASN][1000 genomes]
rs505135	0.82[ASN][1000 genomes]
rs511809	0.82[ASN][1000 genomes]
rs514307	0.82[ASN][1000 genomes]
rs519135	0.83[ASN][1000 genomes]
rs524397	0.83[ASN][1000 genomes]
rs529740	0.82[ASN][1000 genomes]
rs530690	0.82[ASN][1000 genomes]
rs532412	0.82[ASN][1000 genomes]
rs535889	0.84[ASN][1000 genomes]
rs536773	0.84[ASN][1000 genomes]
rs537782	0.82[ASN][1000 genomes]
rs542999	0.82[ASN][1000 genomes]
rs553928	0.83[ASN][1000 genomes]
rs563206	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs566841	0.95[ASN][1000 genomes]
rs568776	0.82[ASN][1000 genomes]
rs568821	0.82[ASN][1000 genomes]
rs579545	0.82[ASN][1000 genomes]
rs580432	0.82[ASN][1000 genomes]
rs7523559	0.82[ASN][1000 genomes]
rs7530194	0.82[ASN][1000 genomes]
rs7540624	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv2757759	chr1:166491879-166650985	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2758975	chr1:166491879-166650985	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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