Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166660337..166665762-chr1:166666716..166670827,7	K562	blood:
2	chr1:166660337..166665266-chr1:166666489..166671728,7	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10047082	0.87[ASN][1000 genomes]
rs10494466	0.84[ASN][1000 genomes]
rs10800253	0.85[ASN][1000 genomes]
rs10800256	0.98[ASN][1000 genomes]
rs10918553	0.81[ASN][1000 genomes]
rs10918554	0.87[ASN][1000 genomes]
rs11585016	0.87[ASN][1000 genomes]
rs12022833	0.82[ASN][1000 genomes]
rs12074816	0.98[ASN][1000 genomes]
rs12074860	0.98[ASN][1000 genomes]
rs12082938	0.87[ASN][1000 genomes]
rs12406568	0.87[ASN][1000 genomes]
rs3904697	0.96[ASN][1000 genomes]
rs3904700	0.98[ASN][1000 genomes]
rs3904701	0.85[ASN][1000 genomes]
rs4068473	0.85[ASN][1000 genomes]
rs4090281	0.87[ASN][1000 genomes]
rs4320765	1.00[ASN][1000 genomes]
rs4393133	0.85[ASN][1000 genomes]
rs4475724	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs563206	0.85[ASN][1000 genomes]
rs566841	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7517690	0.89[ASN][1000 genomes]
rs7523559	1.00[ASN][1000 genomes]
rs7530194	1.00[ASN][1000 genomes]
rs7540624	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv2752389	chr1:166625342-166706342	Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv947550	chr1:166647096-166673303	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166660400-166665200	Enhancers	K562	blood
2	chr1:166660800-166662400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search: