Variant report

Variant	rs1203355
Chromosome Location	chr6:130843131-130843132
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12526873	0.83[ASN][1000 genomes]
rs2326916	0.87[ASN][1000 genomes]
rs2876084	0.83[ASN][1000 genomes]
rs6569688	0.83[ASN][1000 genomes]
rs6940599	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130835200-130844800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:130839400-130844800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:130839400-130845000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:130839400-130848000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:130839800-130844600	Weak transcription	Psoas Muscle	Psoas
6	chr6:130839800-130845000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:130839800-130845600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:130839800-130845600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:130840000-130844600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr6:130840000-130844800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:130840000-130845000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:130840000-130847600	Weak transcription	HMEC	breast
13	chr6:130840000-130847800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:130840400-130844600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:130842000-130843600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:130842200-130843600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:130842200-130845000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:130842200-130847600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:130842400-130844600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:130842400-130845000	Weak transcription	Fetal Thymus	thymus

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