Variant report

Variant	rs12034880
Chromosome Location	chr1:169730724-169730725
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10489181	0.82[ASN][1000 genomes]
rs10919232	0.86[ASN][1000 genomes]
rs10919233	0.86[ASN][1000 genomes]
rs12023614	0.82[ASN][1000 genomes]
rs12044082	0.81[ASN][1000 genomes]
rs16862663	0.82[ASN][1000 genomes]
rs2272818	0.86[ASN][1000 genomes]
rs34990593	0.81[ASN][1000 genomes]
rs4656192	0.82[ASN][1000 genomes]
rs7520701	0.83[ASN][1000 genomes]
rs7523319	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	esv3375005	chr1:169730301-169730861	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3392133	chr1:169730372-169730822	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169728000-169732800	Weak transcription	Adipose Nuclei	Adipose
2	chr1:169728400-169731800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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