Variant report

Variant	rs4656192
Chromosome Location	chr1:169714961-169714962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169708800..169711627-chr1:169714928..169717201,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10489181	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489182	0.95[ASN][1000 genomes]
rs1076637	0.81[ASN][1000 genomes]
rs10919228	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10919232	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10919233	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11584020	0.81[EUR][1000 genomes]
rs11588380	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12023614	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12034880	0.82[ASN][1000 genomes]
rs12044082	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12072966	0.86[EUR][1000 genomes]
rs12087033	0.86[EUR][1000 genomes]
rs16862661	0.90[EUR][1000 genomes]
rs16862663	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862672	0.86[EUR][1000 genomes]
rs2272818	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2298899	0.86[EUR][1000 genomes]
rs2420504	0.86[EUR][1000 genomes]
rs2420505	0.93[ASN][1000 genomes]
rs28469136	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34990593	0.91[ASN][1000 genomes]
rs3917405	0.88[EUR][1000 genomes]
rs4656699	0.86[EUR][1000 genomes]
rs4656700	0.86[EUR][1000 genomes]
rs4987301	0.86[EUR][1000 genomes]
rs4987306	0.86[EUR][1000 genomes]
rs4987314	0.86[EUR][1000 genomes]
rs4987320	0.86[EUR][1000 genomes]
rs4987322	0.85[EUR][1000 genomes]
rs4987328	0.86[EUR][1000 genomes]
rs5356	0.88[EUR][1000 genomes]
rs5368	0.87[EUR][1000 genomes]
rs57793783	0.86[EUR][1000 genomes]
rs7418242	0.85[EUR][1000 genomes]
rs7520701	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7523319	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7523520	0.85[EUR][1000 genomes]
rs7543268	0.93[ASN][1000 genomes]
rs964555	0.85[EUR][1000 genomes]
rs964556	0.84[EUR][1000 genomes]
rs964557	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169713800-169715200	Enhancers	HUVEC	blood vessel
2	chr1:169714200-169715000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:169714200-169715200	Flanking Active TSS	HepG2	liver
4	chr1:169714200-169715600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:169714200-169715800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:169714200-169715800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:169714200-169715800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:169714200-169715800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:169714200-169716200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:169714400-169715200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:169714400-169715800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:169714400-169715800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:169714600-169715000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:169714600-169715200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr1:169714600-169715400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:169714600-169715800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr1:169714800-169715000	Flanking Active TSS	Liver	Liver
18	chr1:169714800-169715200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr1:169714800-169715200	Enhancers	NH-A	brain
20	chr1:169714800-169715600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr1:169714800-169715600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links