Variant report

Variant	rs28469136
Chromosome Location	chr1:169706030-169706031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169705648..169707388-chr1:169710933..169712519,2	MCF-7	breast:
2	chr1:169704931..169706505-chr1:169859799..169862220,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10489181	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10489182	0.82[AFR][1000 genomes]
rs1076637	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1076638	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10800475	0.91[ASN][1000 genomes]
rs10919228	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10919235	0.91[ASN][1000 genomes]
rs11581380	0.92[ASN][1000 genomes]
rs12023614	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12027035	0.92[ASN][1000 genomes]
rs12044082	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12076368	0.90[EUR][1000 genomes]
rs12079552	0.90[EUR][1000 genomes]
rs16862663	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1883229	0.90[EUR][1000 genomes]
rs1961877	0.90[EUR][1000 genomes]
rs2205849	0.90[EUR][1000 genomes]
rs2229569	0.90[EUR][1000 genomes]
rs2420505	0.81[AFR][1000 genomes]
rs35289447	0.90[EUR][1000 genomes]
rs3917406	0.93[ASN][1000 genomes]
rs3917423	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3917430	0.92[EUR][1000 genomes]
rs3917435	0.92[EUR][1000 genomes]
rs3917449	0.85[ASN][1000 genomes]
rs4265482	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4427452	0.90[EUR][1000 genomes]
rs4656192	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4656698	0.90[EUR][1000 genomes]
rs4987266	0.90[EUR][1000 genomes]
rs4987298	0.90[EUR][1000 genomes]
rs5359	0.92[EUR][1000 genomes]
rs58662634	0.90[EUR][1000 genomes]
rs59807249	0.90[EUR][1000 genomes]
rs6427212	0.90[EUR][1000 genomes]
rs6673493	0.91[ASN][1000 genomes]
rs67193278	0.93[ASN][1000 genomes]
rs7513119	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv3333264	chr1:169705778-169707626	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169703800-169707800	Weak transcription	HUVEC	blood vessel
2	chr1:169706000-169706400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:169706000-169706400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:169706000-169706400	Enhancers	Liver	Liver
5	chr1:169706000-169707000	Enhancers	HUES48 Cell Line	embryonic stem cell

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