Variant report

Variant	rs4265482
Chromosome Location	chr1:169727882-169727883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169727288..169729561-chr1:169762076..169765859,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000000460	Chromatin interaction
ENSG00000171806	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10489181	0.82[AFR][1000 genomes]
rs10489182	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1051091	0.89[EUR][1000 genomes]
rs1076637	0.89[ASN][1000 genomes]
rs1076638	0.87[ASN][1000 genomes]
rs10800469	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10800475	0.88[ASN][1000 genomes]
rs10919227	0.80[AMR][1000 genomes]
rs10919228	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10919235	0.88[ASN][1000 genomes]
rs11581380	0.90[ASN][1000 genomes]
rs12027035	0.90[ASN][1000 genomes]
rs12044082	0.82[AFR][1000 genomes]
rs12131780	0.87[EUR][1000 genomes]
rs16862663	0.82[AFR][1000 genomes]
rs1883228	0.89[EUR][1000 genomes]
rs2205847	0.89[EUR][1000 genomes]
rs2272818	0.90[AFR][1000 genomes]
rs2420503	0.89[EUR][1000 genomes]
rs2420505	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28469136	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs34990593	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3766129	0.89[EUR][1000 genomes]
rs3917406	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3917413	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3917423	0.87[ASN][1000 genomes]
rs3917436	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3917444	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3917449	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4656189	0.82[EUR][1000 genomes]
rs4656697	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4656701	0.82[EUR][1000 genomes]
rs4656703	0.82[EUR][1000 genomes]
rs4656704	0.82[EUR][1000 genomes]
rs4786	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4987270	0.87[EUR][1000 genomes]
rs4987285	0.82[EUR][1000 genomes]
rs4987318	0.82[EUR][1000 genomes]
rs6673493	0.88[ASN][1000 genomes]
rs67193278	0.90[ASN][1000 genomes]
rs727909	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7543268	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4265482	METTL18	cis	lung	GTEx
rs4265482	SELL	Cis_1M	lymphoblastoid	RTeQTL
rs4265482	METTL18	cis	Artery Tibial	GTEx
rs4265482	METTL18	cis	Esophagus Mucosa	GTEx
rs4265482	METTL18	cis	Thyroid	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links