Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169679878..169683283-chr1:169762041..169765464,5	MCF-7	breast:
2	chr1:169680417..169682445-chr1:169762164..169765185,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000000460	Chromatin interaction
ENSG00000171806	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1051091	0.87[EUR][1000 genomes]
rs10800469	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10919227	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12131780	0.86[EUR][1000 genomes]
rs1883228	0.87[EUR][1000 genomes]
rs2205847	0.87[EUR][1000 genomes]
rs2420503	0.87[EUR][1000 genomes]
rs3766129	0.87[EUR][1000 genomes]
rs3917406	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3917413	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3917436	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3917444	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3917449	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4265482	0.87[EUR][1000 genomes]
rs4656189	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4656697	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4656701	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4656703	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4656704	0.94[EUR][1000 genomes]
rs4786	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4987285	0.94[EUR][1000 genomes]
rs4987318	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs727909	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv872541	chr1:169672360-169695815	Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4987270	METTL18	cis	Thyroid	GTEx
rs4987270	METTL18	cis	Esophagus Mucosa	GTEx
rs4987270	SELL	Cis_1M	lymphoblastoid	RTeQTL
rs4987270	METTL18	cis	Artery Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169681200-169692000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:169681400-169691200	Weak transcription	Liver	Liver
3	chr1:169681600-169684800	Weak transcription	Dnd41	blood

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