Variant report
| Variant | rs727909 |
|---|---|
| Chromosome Location | chr1:169702341-169702342 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1051091 | 0.87[EUR][1000 genomes] |
| rs10800469 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10919227 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12131780 | 0.85[EUR][1000 genomes] |
| rs1883228 | 0.87[EUR][1000 genomes] |
| rs2205847 | 0.87[EUR][1000 genomes] |
| rs2420503 | 0.87[EUR][1000 genomes] |
| rs3766129 | 0.87[EUR][1000 genomes] |
| rs3917406 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3917413 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3917436 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3917444 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3917449 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4265482 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4656189 | 0.94[EUR][1000 genomes] |
| rs4656697 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4656701 | 0.94[EUR][1000 genomes] |
| rs4656703 | 0.94[EUR][1000 genomes] |
| rs4656704 | 0.94[EUR][1000 genomes] |
| rs4786 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4987270 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4987285 | 0.94[EUR][1000 genomes] |
| rs4987318 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532586 | chr1:169593222-169713184 | Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv3451367 | chr1:169630075-169976964 | Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:4)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs727909 | METTL18 | cis | Artery Tibial | GTEx |
| rs727909 | METTL18 | cis | Esophagus Mucosa | GTEx |
| rs727909 | METTL18 | cis | lung | GTEx |
| rs727909 | METTL18 | cis | Thyroid | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:169701800-169702400 | Enhancers | HMEC | breast |
