Variant report

Variant	rs7543268
Chromosome Location	chr1:169727403-169727404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10489181	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10489182	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10919232	0.92[ASN][1000 genomes]
rs10919233	0.92[ASN][1000 genomes]
rs12023614	0.93[ASN][1000 genomes]
rs12044082	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs16862663	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2272818	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2420505	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34990593	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4265482	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4656192	0.93[ASN][1000 genomes]
rs7520701	0.95[ASN][1000 genomes]
rs7523319	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7543268	C1orf156	Cis_1M	lymphoblastoid	RTeQTL
rs7543268	METTL18	cis	lung	GTEx
rs7543268	METTL18	cis	Thyroid	GTEx
rs7543268	METTL18	cis	Artery Tibial	GTEx
rs7543268	METTL18	cis	Esophagus Mucosa	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169727200-169727600	Enhancers	Dnd41	blood
2	chr1:169727200-169727600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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