Variant report

Variant	rs1076637
Chromosome Location	chr1:169697444-169697445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169695880..169697994-chr1:169699455..169701036,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10489181	0.81[ASN][1000 genomes]
rs1076638	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10800469	0.84[JPT][hapmap]
rs10800475	0.88[ASN][1000 genomes]
rs10919228	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10919235	0.88[ASN][1000 genomes]
rs11581380	0.90[ASN][1000 genomes]
rs12023614	0.81[ASN][1000 genomes]
rs12027035	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs12076368	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12079552	0.91[EUR][1000 genomes]
rs16862663	0.81[ASN][1000 genomes]
rs1883229	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1961877	0.91[EUR][1000 genomes]
rs2205849	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2229569	0.91[EUR][1000 genomes]
rs2420505	0.91[CHB][hapmap]
rs28469136	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35289447	0.91[EUR][1000 genomes]
rs3917406	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3917423	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3917430	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3917435	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3917449	0.86[ASN][1000 genomes]
rs4265482	0.89[ASN][1000 genomes]
rs4427452	0.91[EUR][1000 genomes]
rs4656192	0.81[ASN][1000 genomes]
rs4656698	0.91[EUR][1000 genomes]
rs4987266	0.91[EUR][1000 genomes]
rs4987298	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs5353	0.81[JPT][hapmap]
rs5359	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58662634	0.91[EUR][1000 genomes]
rs59807249	0.91[EUR][1000 genomes]
rs6427212	0.91[EUR][1000 genomes]
rs6673493	0.88[ASN][1000 genomes]
rs67193278	0.90[ASN][1000 genomes]
rs7513119	0.91[EUR][1000 genomes]
rs932307	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.95[MKK][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169691600-169698400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:169691800-169698200	Weak transcription	Left Ventricle	heart

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