Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169697490..169699500-chr1:169702198..169704978,2	MCF-7	breast:
2	chr1:169695880..169697994-chr1:169699455..169701036,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007908	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1076637	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10800475	0.86[ASN][1000 genomes]
rs10919228	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10919235	0.86[ASN][1000 genomes]
rs11581380	0.88[ASN][1000 genomes]
rs12027035	0.88[ASN][1000 genomes]
rs12076368	0.91[EUR][1000 genomes]
rs12079552	0.91[EUR][1000 genomes]
rs1883229	0.91[EUR][1000 genomes]
rs1961877	0.91[EUR][1000 genomes]
rs2205849	0.91[EUR][1000 genomes]
rs2229569	0.91[EUR][1000 genomes]
rs28469136	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35289447	0.91[EUR][1000 genomes]
rs3917406	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3917423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917430	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3917435	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3917449	0.90[ASN][1000 genomes]
rs4265482	0.87[ASN][1000 genomes]
rs4427452	0.91[EUR][1000 genomes]
rs4656698	0.91[EUR][1000 genomes]
rs4987266	0.91[EUR][1000 genomes]
rs4987298	0.91[EUR][1000 genomes]
rs5359	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58662634	0.91[EUR][1000 genomes]
rs59807249	0.91[EUR][1000 genomes]
rs6427212	0.91[EUR][1000 genomes]
rs6673493	0.86[ASN][1000 genomes]
rs67193278	0.88[ASN][1000 genomes]
rs7513119	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169691600-169698400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:169691800-169698200	Weak transcription	Left Ventricle	heart

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