Variant report

Variant	rs57793783
Chromosome Location	chr1:169727327-169727328
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169727288..169729561-chr1:169762076..169765859,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171806	Chromatin interaction
ENSG00000000460	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10489181	0.86[EUR][1000 genomes]
rs10919232	0.90[EUR][1000 genomes]
rs10919233	0.90[EUR][1000 genomes]
rs11584020	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11588380	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12023614	0.84[EUR][1000 genomes]
rs12044082	0.86[EUR][1000 genomes]
rs12072966	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12087033	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16862661	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16862663	0.86[EUR][1000 genomes]
rs16862672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272818	0.90[EUR][1000 genomes]
rs2298899	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2420504	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3917405	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3917428	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3917432	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4656192	0.86[EUR][1000 genomes]
rs4656699	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4656700	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4656718	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4987301	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4987306	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4987314	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4987320	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4987322	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4987328	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5356	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5368	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7418242	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7520701	0.90[EUR][1000 genomes]
rs7523319	0.90[EUR][1000 genomes]
rs7523520	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs964555	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs964556	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs964557	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169727200-169727600	Enhancers	Dnd41	blood
2	chr1:169727200-169727600	Enhancers	HepG2	liver

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