Variant report

Variant	rs3917432
Chromosome Location	chr1:169695110-169695111
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10489175	0.87[CEU][hapmap]
rs1051091	0.85[CHB][hapmap]
rs11577641	0.87[CEU][hapmap]
rs11579102	0.87[CEU][hapmap]
rs11584020	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11588380	0.94[ASN][1000 genomes]
rs11589659	0.87[CEU][hapmap]
rs11589671	0.86[CEU][hapmap]
rs11590604	0.87[CEU][hapmap]
rs12072966	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12076368	0.95[CHB][hapmap]
rs12087033	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16828209	0.87[CEU][hapmap]
rs16862661	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16862672	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16862683	0.87[CEU][hapmap]
rs1883228	0.90[CHB][hapmap]
rs1883229	0.95[CHB][hapmap]
rs2205847	0.90[CHB][hapmap]
rs2205849	0.95[CHB][hapmap]
rs2298899	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2420504	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2420510	0.87[CEU][hapmap]
rs2420511	0.87[CEU][hapmap]
rs3753312	0.87[CEU][hapmap]
rs3766129	0.90[CHB][hapmap]
rs3766138	0.87[CEU][hapmap]
rs3766145	0.87[CEU][hapmap]
rs3766146	0.87[CEU][hapmap]
rs3817859	0.87[CEU][hapmap]
rs3917405	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3917428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3917430	0.95[CHB][hapmap]
rs4656699	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4656700	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4656718	0.87[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4656726	0.86[CEU][hapmap]
rs4987298	0.95[CHB][hapmap]
rs4987301	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4987306	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4987314	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4987320	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4987322	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4987328	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs5356	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs5359	0.95[CHB][hapmap]
rs5368	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57793783	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6685211	0.87[CEU][hapmap]
rs7418242	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7523520	0.91[ASN][1000 genomes]
rs964555	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs964556	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs964557	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv872541	chr1:169672360-169695815	Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169691600-169698400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:169691800-169698200	Weak transcription	Left Ventricle	heart
3	chr1:169693800-169695800	Weak transcription	HepG2	liver
4	chr1:169694600-169696600	Flanking Active TSS	Liver	Liver

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