Variant report

Variant	rs12035213
Chromosome Location	chr1:210592100-210592101
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210590026..210592841-chr1:211432035..211434761,3	MCF-7	breast:
2	chr1:210542938..210544518-chr1:210591171..210592878,2	MCF-7	breast:
3	chr1:210545312..210548912-chr1:210591590..210593685,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10779529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863830	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11119487	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11119490	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11119495	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11119496	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12028017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12119268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12124208	0.83[AFR][1000 genomes]
rs12133649	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12137102	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12142231	0.83[AFR][1000 genomes]
rs12145163	0.83[AFR][1000 genomes]
rs17260431	0.83[AFR][1000 genomes]
rs17260438	0.83[AFR][1000 genomes]
rs17260466	0.83[AFR][1000 genomes]
rs3765838	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3765848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3765853	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3819985	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4253918	0.83[AFR][1000 genomes]
rs4620549	0.83[AFR][1000 genomes]
rs55726579	0.83[AFR][1000 genomes]
rs6540599	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756883	chr1:210579523-210620779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv2758995	chr1:210579523-210620779	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
2	chr1:210570200-210594000	Weak transcription	Fetal Lung	lung
3	chr1:210571200-210592400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:210573600-210592400	Weak transcription	Fetal Intestine Small	intestine
6	chr1:210573800-210592200	Weak transcription	Primary T cells from cord blood	blood
7	chr1:210573800-210594400	Weak transcription	Spleen	Spleen
8	chr1:210574400-210592200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:210574400-210594400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:210574400-210595200	Weak transcription	Right Ventricle	heart
11	chr1:210581200-210592400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:210583400-210592400	Weak transcription	Liver	Liver
13	chr1:210585200-210593600	Weak transcription	Fetal Stomach	stomach
14	chr1:210586400-210610800	Weak transcription	Aorta	Aorta
15	chr1:210589400-210592800	Enhancers	HSMM	muscle
16	chr1:210589600-210592600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:210590000-210592400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr1:210590200-210592800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:210591000-210592800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:210591200-210592400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:210591800-210592800	Enhancers	Stomach Mucosa	stomach
22	chr1:210592000-210593000	Enhancers	HSMMtube	muscle
23	chr1:210592000-210609400	Weak transcription	Ovary	ovary

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