Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10779529	0.83[AFR][1000 genomes]
rs11119487	0.83[AFR][1000 genomes]
rs12028017	0.83[AFR][1000 genomes]
rs12035213	0.83[AFR][1000 genomes]
rs12117750	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12119268	0.83[AFR][1000 genomes]
rs12124208	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12142231	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12143482	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12143703	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12145163	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17260431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17260438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17260466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3765848	0.83[AFR][1000 genomes]
rs3765853	0.83[AFR][1000 genomes]
rs3819985	0.83[AFR][1000 genomes]
rs4253918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4620549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55726579	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55780618	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210639400-210668200	Weak transcription	Primary T cells from cord blood	blood
2	chr1:210643200-210674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:210653800-210678800	Weak transcription	HSMM	muscle
4	chr1:210657000-210669600	Weak transcription	Brain Substantia Nigra	brain
5	chr1:210658800-210664800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:210660600-210664600	Weak transcription	Aorta	Aorta
7	chr1:210662600-210664800	Enhancers	Fetal Muscle Leg	muscle
8	chr1:210663600-210669600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:210663600-210672400	Weak transcription	HSMMtube	muscle

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