Variant report

Variant	rs12035755
Chromosome Location	chr1:222152249-222152250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10863674	0.84[ASN][1000 genomes]
rs11118925	0.86[ASN][1000 genomes]
rs12036536	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17441981	0.86[ASN][1000 genomes]
rs2225999	0.84[ASN][1000 genomes]
rs6686477	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222146200-222163800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:222147800-222152400	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr1:222148800-222154800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:222150600-222152400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr1:222150800-222152600	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr1:222151200-222152400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:222151400-222152400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:222151400-222152400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:222152000-222152400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:222152200-222152400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr1:222152200-222152600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:222152200-222152800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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