Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10863674	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118911	0.85[EUR][1000 genomes]
rs11118921	0.95[EUR][1000 genomes]
rs11118922	0.95[EUR][1000 genomes]
rs11118923	0.95[EUR][1000 genomes]
rs11118924	0.96[EUR][1000 genomes]
rs11118925	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118929	0.83[EUR][1000 genomes]
rs12035755	0.86[ASN][1000 genomes]
rs12036536	0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12070612	0.92[EUR][1000 genomes]
rs12082069	0.82[EUR][1000 genomes]
rs12083686	0.81[EUR][1000 genomes]
rs12090915	0.95[EUR][1000 genomes]
rs12403104	0.84[EUR][1000 genomes]
rs17495034	0.97[EUR][1000 genomes]
rs2225999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34601597	0.81[EUR][1000 genomes]
rs34736719	0.85[EUR][1000 genomes]
rs61823898	0.95[EUR][1000 genomes]
rs6686477	0.93[ASN][1000 genomes]
rs7538348	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1009077	chr1:222176979-222180320	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222169200-222184000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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