Variant report

Variant	rs11118924
Chromosome Location	chr1:222168110-222168111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10863674	0.93[EUR][1000 genomes]
rs11118911	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11118921	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118922	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118923	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118925	0.96[EUR][1000 genomes]
rs11118929	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12070612	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12082069	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12083686	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12090915	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12403104	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17441981	0.96[EUR][1000 genomes]
rs17442148	0.92[CHB][hapmap];0.84[CHD][hapmap];0.85[ASN][1000 genomes]
rs17495034	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2225999	0.91[CEU][hapmap];0.92[GIH][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes]
rs34601597	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34736719	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4291507	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4565720	0.90[ASN][1000 genomes]
rs59826275	0.86[ASN][1000 genomes]
rs61823898	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6686477	0.81[CEU][hapmap]
rs7517045	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7538348	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222159600-222169400	Enhancers	HMEC	breast
2	chr1:222163600-222169800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:222165000-222171600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:222165800-222172000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:222166400-222168200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:222166600-222169400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:222166600-222171800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:222166800-222168400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr1:222166800-222169200	Enhancers	Osteobl	bone
10	chr1:222167000-222168200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:222167000-222168200	Enhancers	NHEK	skin
12	chr1:222167000-222168400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr1:222167000-222169200	Enhancers	HSMM	muscle
14	chr1:222167000-222169200	Enhancers	NHLF	lung
15	chr1:222167000-222169400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:222167000-222172000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:222167200-222168800	Enhancers	GM12878-XiMat	blood
18	chr1:222167200-222169000	Enhancers	HSMMtube	muscle
19	chr1:222167200-222169200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:222167200-222169200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:222167200-222169200	Enhancers	NH-A	brain
22	chr1:222167200-222169400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:222167200-222169400	Enhancers	Brain Anterior Caudate	brain
24	chr1:222167200-222169400	Enhancers	NHDF-Ad	bronchial
25	chr1:222167400-222168600	Enhancers	Brain Hippocampus Middle	brain
26	chr1:222167400-222169000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:222167400-222169200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:222167400-222169200	Enhancers	Brain Cingulate Gyrus	brain
29	chr1:222167600-222168200	Enhancers	Brain Substantia Nigra	brain
30	chr1:222167600-222168600	Enhancers	Brain Angular Gyrus	brain
31	chr1:222167800-222168200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr1:222168000-222168400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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