Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10863674	0.95[EUR][1000 genomes]
rs11118911	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11118921	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11118922	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11118923	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11118924	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11118925	0.98[EUR][1000 genomes]
rs11118929	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12070612	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12082069	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12083686	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12090915	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12403104	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17441981	0.97[EUR][1000 genomes]
rs17442148	0.92[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2225999	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs34601597	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34736719	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4291507	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4565720	0.85[ASN][1000 genomes]
rs59826275	0.84[ASN][1000 genomes]
rs61823898	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7517045	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7538348	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222169200-222184000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:222180000-222181400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:222180400-222181400	Weak transcription	HSMM	muscle
4	chr1:222181000-222181600	Flanking Active TSS	Liver	Liver
5	chr1:222181000-222182000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:222181000-222183200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:222181200-222181400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:222181200-222181400	Flanking Active TSS	Osteobl	bone
9	chr1:222181200-222181600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:222181200-222181600	Enhancers	NHLF	lung

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