Variant report

Variant	rs11118922
Chromosome Location	chr1:222161179-222161180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:221889093..221891683-chr1:222160866..222163448,2	K562	blood:
2	chr1:222154687..222157582-chr1:222159265..222162751,4	K562	blood:
3	chr1:222154687..222156837-chr1:222159870..222162751,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10863674	0.92[EUR][1000 genomes]
rs11118911	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118921	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118924	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118925	0.95[EUR][1000 genomes]
rs11118929	0.85[EUR][1000 genomes]
rs12070612	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12082069	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12083686	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12090915	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12403104	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17441981	0.95[EUR][1000 genomes]
rs17442148	0.92[CHB][hapmap];0.81[CHD][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs17495034	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2225999	0.91[CEU][hapmap];0.88[GIH][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs34601597	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34736719	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4291507	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4565720	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59826275	0.85[ASN][1000 genomes]
rs61823898	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6686477	0.81[CEU][hapmap]
rs7517045	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7538348	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222146200-222163800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:222153200-222161400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:222153200-222163800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:222156600-222166000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:222157400-222161200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:222159600-222162800	Enhancers	HSMMtube	muscle
7	chr1:222159600-222169400	Enhancers	HMEC	breast
8	chr1:222160200-222162000	Enhancers	NHDF-Ad	bronchial
9	chr1:222160200-222162200	Enhancers	NHEK	skin
10	chr1:222160400-222161200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:222160400-222161400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:222160400-222162400	Enhancers	K562	blood
13	chr1:222160400-222162800	Genic enhancers	HSMM	muscle
14	chr1:222160400-222165400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:222160400-222165800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:222160600-222161200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:222160600-222161800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:222160600-222161800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:222160600-222162000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:222160600-222162000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:222160800-222161400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:222160800-222161600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr1:222160800-222161800	Enhancers	Hela-S3	cervix
24	chr1:222160800-222162200	Enhancers	Osteobl	bone
25	chr1:222161000-222161600	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr1:222161000-222161800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:222161000-222162000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:222161000-222162000	Enhancers	Brain Substantia Nigra	brain
29	chr1:222161000-222162000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr1:222161000-222162000	Enhancers	NH-A	brain
31	chr1:222161000-222165200	Enhancers	NHLF	lung
32	chr1:222161000-222165400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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