Variant report

Variant	rs12037629
Chromosome Location	chr1:221836464-221836465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221836329..221837894-chr1:221839108..221841311,2	MCF-7	breast:
2	chr1:221830865..221833221-chr1:221836408..221838119,2	MCF-7	breast:

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10429944	0.82[ASN][1000 genomes]
rs10429945	0.82[ASN][1000 genomes]
rs10429946	0.82[ASN][1000 genomes]
rs10429956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10429957	0.85[ASN][1000 genomes]
rs10429958	0.85[ASN][1000 genomes]
rs10429960	0.82[ASN][1000 genomes]
rs10429961	0.85[ASN][1000 genomes]
rs10429963	0.82[ASN][1000 genomes]
rs10429964	0.82[ASN][1000 genomes]
rs10495165	0.81[EUR][1000 genomes]
rs10495166	0.81[EUR][1000 genomes]
rs10495167	0.81[EUR][1000 genomes]
rs10495168	0.81[EUR][1000 genomes]
rs10863644	0.85[ASN][1000 genomes]
rs10863645	0.85[ASN][1000 genomes]
rs10863646	0.82[ASN][1000 genomes]
rs11118748	0.81[EUR][1000 genomes]
rs11118802	0.90[ASN][1000 genomes]
rs11118806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118807	0.90[ASN][1000 genomes]
rs11118808	0.90[ASN][1000 genomes]
rs11118809	0.90[ASN][1000 genomes]
rs11118810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118811	0.90[ASN][1000 genomes]
rs11118812	0.85[ASN][1000 genomes]
rs11118813	0.85[ASN][1000 genomes]
rs11118814	0.85[ASN][1000 genomes]
rs11118815	0.85[ASN][1000 genomes]
rs11118816	0.85[ASN][1000 genomes]
rs11118817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11118818	0.85[ASN][1000 genomes]
rs11118819	0.85[ASN][1000 genomes]
rs11118821	0.85[ASN][1000 genomes]
rs11576646	0.85[ASN][1000 genomes]
rs11808469	0.85[ASN][1000 genomes]
rs11808503	0.85[ASN][1000 genomes]
rs11809184	0.85[ASN][1000 genomes]
rs11809818	0.85[ASN][1000 genomes]
rs11810697	0.85[ASN][1000 genomes]
rs11811485	0.85[ASN][1000 genomes]
rs11811644	0.85[ASN][1000 genomes]
rs12021627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12021952	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12023345	0.85[ASN][1000 genomes]
rs12024440	0.85[ASN][1000 genomes]
rs12024464	0.85[ASN][1000 genomes]
rs12025710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12025878	0.85[ASN][1000 genomes]
rs12027038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12031670	0.85[ASN][1000 genomes]
rs12035928	0.90[ASN][1000 genomes]
rs12036305	0.90[ASN][1000 genomes]
rs12036766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12036771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12037802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12041614	0.85[ASN][1000 genomes]
rs12042290	0.85[ASN][1000 genomes]
rs12043339	0.92[ASN][1000 genomes]
rs12044981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12401793	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12403055	0.81[EUR][1000 genomes]
rs12403320	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12404274	0.81[EUR][1000 genomes]
rs12405504	0.81[EUR][1000 genomes]
rs12406074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12406778	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12407358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12408488	0.90[ASN][1000 genomes]
rs12408495	0.90[ASN][1000 genomes]
rs12409206	0.81[EUR][1000 genomes]
rs12409261	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12409984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12410562	0.81[EUR][1000 genomes]
rs12411238	0.81[EUR][1000 genomes]
rs13375747	0.85[ASN][1000 genomes]
rs13375841	0.85[ASN][1000 genomes]
rs13376168	0.83[ASN][1000 genomes]
rs13376174	0.85[ASN][1000 genomes]
rs13376254	0.85[ASN][1000 genomes]
rs13376595	0.85[ASN][1000 genomes]
rs1519464	0.85[ASN][1000 genomes]
rs1519465	0.85[ASN][1000 genomes]
rs17010272	0.81[EUR][1000 genomes]
rs17010290	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17010309	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17010459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17010465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17010479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17010482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17010588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17041848	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17041852	0.81[EUR][1000 genomes]
rs17041853	0.81[EUR][1000 genomes]
rs1850831	0.85[ASN][1000 genomes]
rs1914947	0.90[ASN][1000 genomes]
rs1949508	0.90[ASN][1000 genomes]
rs34494638	0.85[ASN][1000 genomes]
rs4465212	0.90[ASN][1000 genomes]
rs57852673	0.84[ASN][1000 genomes]
rs58002157	0.81[EUR][1000 genomes]
rs58467896	0.81[EUR][1000 genomes]
rs58516053	0.81[EUR][1000 genomes]
rs58659812	0.81[EUR][1000 genomes]
rs58696164	0.81[EUR][1000 genomes]
rs58897885	0.85[ASN][1000 genomes]
rs60436564	0.85[ASN][1000 genomes]
rs61817912	0.90[ASN][1000 genomes]
rs61817913	0.90[ASN][1000 genomes]
rs61817924	0.85[ASN][1000 genomes]
rs61817926	0.85[ASN][1000 genomes]
rs61817941	0.85[ASN][1000 genomes]
rs61817945	0.85[ASN][1000 genomes]
rs61817946	0.85[ASN][1000 genomes]
rs61817947	0.85[ASN][1000 genomes]
rs61817948	0.85[ASN][1000 genomes]
rs6661401	0.85[ASN][1000 genomes]
rs6686877	0.90[ASN][1000 genomes]
rs6700504	0.89[ASN][1000 genomes]
rs73106612	0.81[EUR][1000 genomes]
rs73106614	0.81[EUR][1000 genomes]
rs73106616	0.81[EUR][1000 genomes]
rs73106619	0.81[EUR][1000 genomes]
rs73106624	0.81[EUR][1000 genomes]
rs73106634	0.81[EUR][1000 genomes]
rs73116215	0.81[EUR][1000 genomes]
rs73116221	0.81[EUR][1000 genomes]
rs73117996	0.81[EUR][1000 genomes]
rs73117998	0.81[EUR][1000 genomes]
rs73118002	0.81[EUR][1000 genomes]
rs73119903	0.81[EUR][1000 genomes]
rs73119916	0.81[EUR][1000 genomes]
rs73119926	0.81[EUR][1000 genomes]
rs73119928	0.81[EUR][1000 genomes]
rs73119929	0.81[EUR][1000 genomes]
rs73119932	0.81[EUR][1000 genomes]
rs73119935	0.81[EUR][1000 genomes]
rs73119938	0.81[EUR][1000 genomes]
rs73119939	0.81[EUR][1000 genomes]
rs73119945	0.81[EUR][1000 genomes]
rs73119947	0.81[EUR][1000 genomes]
rs73119948	0.81[EUR][1000 genomes]
rs7417317	0.85[ASN][1000 genomes]
rs7517462	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221835800-221837800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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