Variant report

Variant	rs17010465
Chromosome Location	chr1:221810767-221810768
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221809737..221812639-chr1:221914030..221916413,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143507	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10429956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10495165	0.85[EUR][1000 genomes]
rs10495166	0.85[EUR][1000 genomes]
rs10495167	0.85[EUR][1000 genomes]
rs10495168	0.85[EUR][1000 genomes]
rs10863635	0.82[EUR][1000 genomes]
rs11118748	0.84[EUR][1000 genomes]
rs11118806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12021627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12021952	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12025710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12036766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12036771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12037629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12037802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12044981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12401793	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12403055	0.85[EUR][1000 genomes]
rs12403320	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12404274	0.85[EUR][1000 genomes]
rs12405504	0.85[EUR][1000 genomes]
rs12406074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12406778	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12407358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12409206	0.85[EUR][1000 genomes]
rs12409261	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12409984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12410562	0.85[EUR][1000 genomes]
rs12411238	0.85[EUR][1000 genomes]
rs17010272	0.85[EUR][1000 genomes]
rs17010290	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17010309	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17010459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17010479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17010482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17010588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17041848	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17041852	0.85[EUR][1000 genomes]
rs17041853	0.85[EUR][1000 genomes]
rs58002157	0.85[EUR][1000 genomes]
rs58467896	0.85[EUR][1000 genomes]
rs58516053	0.85[EUR][1000 genomes]
rs58659812	0.85[EUR][1000 genomes]
rs58696164	0.85[EUR][1000 genomes]
rs73106612	0.85[EUR][1000 genomes]
rs73106614	0.85[EUR][1000 genomes]
rs73106616	0.85[EUR][1000 genomes]
rs73106619	0.85[EUR][1000 genomes]
rs73106624	0.85[EUR][1000 genomes]
rs73106634	0.85[EUR][1000 genomes]
rs73116211	0.82[EUR][1000 genomes]
rs73116215	0.85[EUR][1000 genomes]
rs73116221	0.85[EUR][1000 genomes]
rs73117996	0.85[EUR][1000 genomes]
rs73117998	0.85[EUR][1000 genomes]
rs73118002	0.85[EUR][1000 genomes]
rs73119903	0.85[EUR][1000 genomes]
rs73119916	0.85[EUR][1000 genomes]
rs73119926	0.85[EUR][1000 genomes]
rs73119928	0.85[EUR][1000 genomes]
rs73119929	0.85[EUR][1000 genomes]
rs73119932	0.85[EUR][1000 genomes]
rs73119935	0.85[EUR][1000 genomes]
rs73119938	0.85[EUR][1000 genomes]
rs73119939	0.85[EUR][1000 genomes]
rs73119945	0.85[EUR][1000 genomes]
rs73119947	0.85[EUR][1000 genomes]
rs73119948	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221806000-221811200	Weak transcription	Fetal Heart	heart
2	chr1:221806200-221813600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:221809200-221811000	Weak transcription	HMEC	breast
4	chr1:221810000-221811200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:221810200-221811000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:221810200-221811200	Enhancers	Brain Cingulate Gyrus	brain
7	chr1:221810200-221811400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:221810200-221811400	Enhancers	Brain Angular Gyrus	brain
9	chr1:221810200-221811600	Enhancers	Brain Anterior Caudate	brain
10	chr1:221810200-221811600	Enhancers	Brain Substantia Nigra	brain
11	chr1:221810200-221811600	Enhancers	NHDF-Ad	bronchial
12	chr1:221810400-221811200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:221810400-221811200	Enhancers	Right Atrium	heart
14	chr1:221810400-221811400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:221810400-221811600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:221810400-221811600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr1:221810400-221811600	Enhancers	Fetal Muscle Leg	muscle
18	chr1:221810400-221811600	Enhancers	HSMMtube	muscle
19	chr1:221810600-221811200	Enhancers	Colon Smooth Muscle	Colon
20	chr1:221810600-221811200	Enhancers	Right Ventricle	heart
21	chr1:221810600-221811400	Enhancers	Brain Germinal Matrix	brain
22	chr1:221810600-221811600	Enhancers	Brain Hippocampus Middle	brain
23	chr1:221810600-221811600	Enhancers	HSMM	muscle
24	chr1:221810600-221811600	Enhancers	Osteobl	bone

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