Variant report

Variant	rs1203799
Chromosome Location	chr11:65972590-65972591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1143916	1.00[AMR][1000 genomes]
rs1151508	1.00[AMR][1000 genomes]
rs1191715	1.00[AMR][1000 genomes]
rs1630638	1.00[AMR][1000 genomes]
rs1783562	1.00[AMR][1000 genomes]
rs4930332	1.00[AMR][1000 genomes]
rs59973646	1.00[AMR][1000 genomes]
rs6591196	1.00[AMR][1000 genomes]
rs73498471	1.00[AMR][1000 genomes]
rs7947668	1.00[AMR][1000 genomes]
rs948477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	esv3332923	chr11:65961593-65981589	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65929600-65977800	Weak transcription	HSMMtube	muscle
2	chr11:65938400-65978000	Weak transcription	Aorta	Aorta
3	chr11:65940000-65978000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:65940400-65978000	Weak transcription	Esophagus	oesophagus
5	chr11:65944400-65977800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:65949800-65977800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:65950200-65978400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:65957000-65978400	Weak transcription	Brain Angular Gyrus	brain
9	chr11:65958800-65977800	Weak transcription	Lung	lung
10	chr11:65958800-65978600	Weak transcription	Pancreas	Pancrea
11	chr11:65958800-65983600	Weak transcription	Small Intestine	intestine
12	chr11:65958800-65989200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:65959200-65989400	Weak transcription	K562	blood
14	chr11:65959400-65983400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:65959600-65978400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:65959600-65983600	Weak transcription	Colonic Mucosa	Colon
17	chr11:65960200-65977800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:65960200-65978000	Weak transcription	Right Ventricle	heart
19	chr11:65960200-65984000	Weak transcription	Fetal Heart	heart
20	chr11:65960400-65978000	Weak transcription	Gastric	stomach
21	chr11:65960400-65978000	Weak transcription	HMEC	breast
22	chr11:65960600-65976600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:65960600-65980600	Weak transcription	Fetal Kidney	kidney
24	chr11:65960600-65983600	Weak transcription	Fetal Brain Male	brain
25	chr11:65961200-65983600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:65961400-65978000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:65961400-65978000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:65961400-66011200	Weak transcription	Psoas Muscle	Psoas
29	chr11:65961600-65979000	Weak transcription	Dnd41	blood
30	chr11:65962000-65978000	Weak transcription	Spleen	Spleen
31	chr11:65962200-65983800	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:65962400-65977800	Weak transcription	Placenta	Placenta
33	chr11:65962400-65983600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:65962800-65983600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:65963000-65977800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:65963000-65984200	Weak transcription	HUVEC	blood vessel
37	chr11:65963400-65976600	Weak transcription	HSMM	muscle
38	chr11:65963400-65977000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr11:65963400-65978000	Weak transcription	Ovary	ovary
40	chr11:65963600-65976600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:65963600-65976800	Weak transcription	Liver	Liver
42	chr11:65963600-65977600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr11:65963800-65978200	Weak transcription	Left Ventricle	heart
44	chr11:65964000-65978000	Weak transcription	Thymus	Thymus
45	chr11:65964000-65983600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr11:65964000-65989600	Weak transcription	Stomach Mucosa	stomach
47	chr11:65964800-65976600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:65965800-65976600	Weak transcription	HepG2	liver
49	chr11:65966000-65975600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:65966000-65976400	Weak transcription	Osteobl	bone

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