Variant report

Variant	rs7947668
Chromosome Location	chr11:65801129-65801130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65799174..65802005-chr11:65821311..65824271,2	MCF-7	breast:
2	chr11:65791115..65793279-chr11:65800928..65803391,2	MCF-7	breast:
3	chr11:65762816..65765321-chr11:65799547..65802531,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000087365	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1143916	1.00[AMR][1000 genomes]
rs1144796	1.00[AMR][1000 genomes]
rs1151508	1.00[AMR][1000 genomes]
rs1151532	0.96[AFR][1000 genomes]
rs1190945	0.88[AFR][1000 genomes]
rs1190946	0.82[AFR][1000 genomes]
rs1191715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1201503	1.00[AMR][1000 genomes]
rs1203551	0.88[AFR][1000 genomes]
rs1203552	0.88[AFR][1000 genomes]
rs1203749	0.96[AFR][1000 genomes]
rs1203750	0.96[AFR][1000 genomes]
rs1203799	1.00[AMR][1000 genomes]
rs1203801	0.96[AFR][1000 genomes]
rs1630638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1783562	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2430981	0.86[AFR][1000 genomes]
rs2452687	0.96[AFR][1000 genomes]
rs3016315	0.81[AFR][1000 genomes]
rs3017606	0.85[AFR][1000 genomes]
rs471709	0.92[AFR][1000 genomes]
rs472853	0.96[AFR][1000 genomes]
rs475817	0.96[AFR][1000 genomes]
rs477001	0.96[AFR][1000 genomes]
rs485547	0.89[AFR][1000 genomes]
rs4930332	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs502898	0.86[AFR][1000 genomes]
rs504456	0.96[AFR][1000 genomes]
rs505412	0.88[AFR][1000 genomes]
rs505642	0.96[AFR][1000 genomes]
rs510398	0.81[AFR][1000 genomes]
rs512316	0.88[AFR][1000 genomes]
rs515778	0.88[AFR][1000 genomes]
rs519911	0.96[AFR][1000 genomes]
rs527279	0.96[AFR][1000 genomes]
rs532265	0.83[AFR][1000 genomes]
rs547282	0.96[AFR][1000 genomes]
rs547892	0.96[AFR][1000 genomes]
rs549228	0.96[AFR][1000 genomes]
rs551652	0.96[AFR][1000 genomes]
rs555826	0.81[AFR][1000 genomes]
rs560105	0.96[AFR][1000 genomes]
rs560983	0.80[AFR][1000 genomes]
rs561199	0.96[AFR][1000 genomes]
rs561869	0.96[AFR][1000 genomes]
rs567414	0.96[AFR][1000 genomes]
rs568423	0.96[AFR][1000 genomes]
rs571368	0.88[AFR][1000 genomes]
rs572697	0.88[AFR][1000 genomes]
rs577301	0.96[AFR][1000 genomes]
rs581247	0.88[AFR][1000 genomes]
rs59973646	1.00[AMR][1000 genomes]
rs6591196	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs693382	0.96[AFR][1000 genomes]
rs73498471	1.00[AMR][1000 genomes]
rs7934588	0.92[AFR][1000 genomes]
rs948477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
3	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
4	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
5	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
6	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv825954	chr11:65792840-65803470	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65783400-65811200	Weak transcription	Aorta	Aorta
2	chr11:65790400-65812600	Weak transcription	Right Atrium	heart
3	chr11:65790400-65818600	Weak transcription	HSMM	muscle
4	chr11:65794400-65804400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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