Variant report

Variant	rs502898
Chromosome Location	chr11:65877115-65877116
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65874283..65877270-chr11:65878896..65881081,3	MCF-7	breast:
2	chr11:65875746..65878415-chr11:65902728..65904507,2	MCF-7	breast:
3	chr11:65869303..65872952-chr11:65875129..65877577,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1151532	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1190945	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1190946	1.00[AMR][1000 genomes]
rs1191715	0.86[AFR][1000 genomes]
rs1203551	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1203552	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1203749	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1203750	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1203801	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1630638	0.86[AFR][1000 genomes]
rs1783562	0.82[AFR][1000 genomes]
rs1783732	1.00[YRI][hapmap]
rs2430981	1.00[AMR][1000 genomes]
rs2452687	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3017606	1.00[AMR][1000 genomes]
rs4523703	0.83[YRI][hapmap]
rs471709	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs472853	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs475817	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs477001	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs485547	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4930332	0.86[AFR][1000 genomes]
rs504456	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs505412	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs505642	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs510398	1.00[YRI][hapmap]
rs512316	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs515778	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs519911	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs527279	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs541954	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs547282	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs547892	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs549228	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs551652	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs555527	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs555826	1.00[YRI][hapmap]
rs559298	1.00[YRI][hapmap]
rs560105	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs561199	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs561869	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs567414	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs568423	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs571368	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs572697	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs577301	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs581247	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6591196	0.82[AFR][1000 genomes]
rs693382	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7947668	0.86[AFR][1000 genomes]
rs948358	1.00[YRI][hapmap]
rs948477	1.00[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65849200-65879600	Weak transcription	Aorta	Aorta
2	chr11:65851600-65882800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:65851800-65878800	Weak transcription	HSMM	muscle
4	chr11:65863800-65880200	Weak transcription	Fetal Stomach	stomach
5	chr11:65868400-65878400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:65868400-65879200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:65868400-65879200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:65868400-65879400	Weak transcription	Esophagus	oesophagus
9	chr11:65868400-65879400	Weak transcription	Ovary	ovary
10	chr11:65868400-65879600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:65868400-65879600	Weak transcription	Fetal Brain Female	brain
12	chr11:65868400-65879600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:65868600-65879200	Weak transcription	Pancreas	Pancrea
14	chr11:65868600-65879400	Weak transcription	Small Intestine	intestine
15	chr11:65868600-65879600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:65868600-65879600	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:65868600-65893800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:65868800-65886200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:65869000-65878000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:65869000-65882800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr11:65869200-65877400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr11:65869200-65879600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:65869800-65879400	Weak transcription	Brain Angular Gyrus	brain
24	chr11:65870000-65879200	Weak transcription	Thymus	Thymus
25	chr11:65870600-65879000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:65870800-65879400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:65872200-65878800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:65872200-65879600	Weak transcription	Brain Germinal Matrix	brain
29	chr11:65872400-65879000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:65872400-65879400	Weak transcription	Adipose Nuclei	Adipose
31	chr11:65873200-65878800	Genic enhancers	Primary T cells from cord blood	blood
32	chr11:65874600-65877600	Enhancers	Hela-S3	cervix
33	chr11:65874600-65879400	Weak transcription	Fetal Intestine Small	intestine
34	chr11:65874800-65877600	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr11:65874800-65879200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr11:65874800-65879200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:65874800-65879400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr11:65874800-65879400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:65874800-65879400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:65874800-65879400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr11:65874800-65879400	Weak transcription	Gastric	stomach
42	chr11:65874800-65879400	Weak transcription	Lung	lung
43	chr11:65874800-65879600	Weak transcription	Psoas Muscle	Psoas
44	chr11:65874800-65880000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr11:65874800-65882800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr11:65875000-65877400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr11:65875000-65877600	Enhancers	GM12878-XiMat	blood
48	chr11:65875000-65878200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr11:65875000-65878600	Weak transcription	NHLF	lung
50	chr11:65875000-65878800	Weak transcription	HUVEC	blood vessel

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