Variant report

Variant	rs532265
Chromosome Location	chr11:65890877-65890878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65885627..65887432-chr11:65890839..65893836,2	MCF-7	breast:
2	chr11:65890121..65892249-chr11:65905098..65907010,2	MCF-7	breast:
3	chr11:65882960..65886510-chr11:65888191..65894408,6	K562	blood:
4	chr11:65844532..65851114-chr11:65890610..65896417,9	MCF-7	breast:
5	chr11:65885486..65887843-chr11:65890510..65893124,3	MCF-7	breast:
6	chr11:65887286..65888969-chr11:65890476..65893047,2	K562	blood:
7	chr11:65835624..65840174-chr11:65890352..65895526,9	MCF-7	breast:
8	chr11:65890715..65892805-chr11:65898976..65901084,2	MCF-7	breast:
9	chr11:65879009..65884313-chr11:65890112..65896035,10	MCF-7	breast:
10	chr11:65890608..65892349-chr11:65939940..65942700,2	MCF-7	breast:
11	chr11:65818637..65820163-chr11:65890071..65893030,2	MCF-7	breast:
12	chr11:65888325..65891190-chr11:65892126..65894347,2	MCF-7	breast:
13	chr11:65835889..65841300-chr11:65890203..65896604,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175115	Chromatin interaction
ENSG00000255038	Chromatin interaction
ENSG00000087365	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1151532	0.86[AFR][1000 genomes]
rs1191715	0.83[AFR][1000 genomes]
rs1203749	0.86[AFR][1000 genomes]
rs1203750	0.86[AFR][1000 genomes]
rs1203801	0.86[AFR][1000 genomes]
rs1630638	0.83[AFR][1000 genomes]
rs2452687	0.86[AFR][1000 genomes]
rs471709	0.83[AFR][1000 genomes]
rs472853	0.86[AFR][1000 genomes]
rs475817	0.86[AFR][1000 genomes]
rs477001	0.86[AFR][1000 genomes]
rs4930332	0.83[AFR][1000 genomes]
rs504456	0.86[AFR][1000 genomes]
rs505642	0.86[AFR][1000 genomes]
rs519911	0.86[AFR][1000 genomes]
rs527279	0.86[AFR][1000 genomes]
rs547282	0.86[AFR][1000 genomes]
rs547892	0.86[AFR][1000 genomes]
rs549228	0.86[AFR][1000 genomes]
rs551652	0.86[AFR][1000 genomes]
rs560105	0.86[AFR][1000 genomes]
rs561199	0.86[AFR][1000 genomes]
rs561869	0.86[AFR][1000 genomes]
rs567414	0.86[AFR][1000 genomes]
rs568423	0.86[AFR][1000 genomes]
rs577301	0.86[AFR][1000 genomes]
rs693382	0.86[AFR][1000 genomes]
rs7947668	0.83[AFR][1000 genomes]
rs948477	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65868600-65893800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:65880400-65905000	Weak transcription	Fetal Stomach	stomach
3	chr11:65880600-65894400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:65881000-65892000	Weak transcription	Brain Anterior Caudate	brain
5	chr11:65881000-65894600	Weak transcription	Gastric	stomach
6	chr11:65881600-65893800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:65883800-65894400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:65884000-65893400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:65884200-65894200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:65884600-65893600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr11:65884600-65893600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:65885000-65893000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:65885600-65892800	Weak transcription	Primary B cells from cord blood	blood
14	chr11:65885600-65893000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr11:65885600-65893600	Weak transcription	Thymus	Thymus
16	chr11:65886600-65892200	Weak transcription	Esophagus	oesophagus
17	chr11:65886600-65893200	Weak transcription	Fetal Thymus	thymus
18	chr11:65887200-65893600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:65887200-65900400	Weak transcription	Fetal Brain Male	brain
20	chr11:65887400-65891400	Weak transcription	Stomach Mucosa	stomach
21	chr11:65887400-65891400	Weak transcription	K562	blood
22	chr11:65887400-65891600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:65887400-65891600	Weak transcription	Right Ventricle	heart
24	chr11:65887400-65892000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:65887400-65892000	Weak transcription	Brain Angular Gyrus	brain
26	chr11:65887400-65893400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:65887400-65893600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:65887400-65893600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr11:65887400-65893600	Weak transcription	Spleen	Spleen
30	chr11:65887400-65894000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:65887400-65894000	Weak transcription	Fetal Muscle Leg	muscle
32	chr11:65887400-65894200	Weak transcription	Right Atrium	heart
33	chr11:65887600-65891400	Weak transcription	NHDF-Ad	bronchial
34	chr11:65887600-65891800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:65887600-65891800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:65887600-65892000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:65887600-65892000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:65887600-65892200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:65887600-65892200	Weak transcription	Small Intestine	intestine
40	chr11:65887600-65893200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:65887600-65893200	Weak transcription	Fetal Intestine Large	intestine
42	chr11:65887600-65893600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr11:65887600-65893600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:65887800-65891400	Weak transcription	NHLF	lung
45	chr11:65887800-65892200	Weak transcription	Left Ventricle	heart
46	chr11:65888000-65891400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:65888000-65891400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:65888000-65891600	Weak transcription	HMEC	breast
49	chr11:65888000-65891800	Weak transcription	Osteobl	bone
50	chr11:65888200-65891400	Weak transcription	GM12878-XiMat	blood

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