Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1009834	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10158205	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10159325	0.83[ASN][1000 genomes]
rs10494939	0.82[ASN][1000 genomes]
rs11119789	0.81[ASN][1000 genomes]
rs11119791	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11119792	0.83[ASN][1000 genomes]
rs11119793	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12027312	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12031285	0.83[ASN][1000 genomes]
rs12037104	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12037708	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12039766	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12569332	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17490409	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2028706	0.83[ASN][1000 genomes]
rs2230489	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3820370	0.83[ASN][1000 genomes]
rs3820371	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6698450	0.82[ASN][1000 genomes]
rs735834	0.82[ASN][1000 genomes]
rs7516751	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7551769	0.84[ASN][1000 genomes]
rs7553543	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754845	chr1:211846605-211878605	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211859600-211868000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211859600-211872000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:211860000-211865000	Weak transcription	HepG2	liver
4	chr1:211862000-211868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:211862200-211868000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr1:211862200-211868200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr1:211863400-211865400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:211864200-211864600	Enhancers	K562	blood

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