Variant report

Variant	rs735834
Chromosome Location	chr1:211857690-211857691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211855881..211858845-chr1:212207068..212209405,3	MCF-7	breast:
2	chr1:211848255..211850522-chr1:211856773..211859290,2	K562	blood:

Variant related genes	Relation type
ENSG00000231057	Chromatin interaction
ENSG00000117650	Chromatin interaction
ENSG00000143493	Chromatin interaction
ENSG00000143476	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10158205	0.82[ASN][1000 genomes]
rs10159325	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10494939	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11119789	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11119791	0.82[ASN][1000 genomes]
rs11119792	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11119793	0.82[ASN][1000 genomes]
rs11802643	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12027312	0.84[ASN][1000 genomes]
rs12031285	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12033864	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12037104	0.82[ASN][1000 genomes]
rs12037708	0.82[ASN][1000 genomes]
rs12039766	0.82[ASN][1000 genomes]
rs12040695	0.82[ASN][1000 genomes]
rs17490409	0.81[ASN][1000 genomes]
rs2028706	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2230489	0.85[ASN][1000 genomes]
rs3820370	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3820371	0.82[ASN][1000 genomes]
rs6698450	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7516751	0.83[ASN][1000 genomes]
rs7551769	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754845	chr1:211846605-211878605	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211855200-211860800	Weak transcription	GM12878-XiMat	blood
2	chr1:211855400-211860800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:211855400-211861400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr1:211856400-211860600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:211857200-211858000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:211857200-211858200	Enhancers	Placenta	Placenta
7	chr1:211857200-211858400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:211857400-211858400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:211857600-211859400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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