Variant report

Variant	rs1204148
Chromosome Location	chr6:13817359-13817360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1204145	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1204156	0.84[ASN][1000 genomes]
rs1204158	0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1204148	CCDC90A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13815400-13820200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:13815600-13818000	Weak transcription	Fetal Kidney	kidney
3	chr6:13815600-13818000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:13815600-13818000	Weak transcription	HepG2	liver
5	chr6:13815600-13818400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:13816200-13820200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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