Variant report

Variant	rs1204158
Chromosome Location	chr6:13827260-13827261
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1204148	0.84[ASN][1000 genomes]
rs1204156	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1204159	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4715595	0.81[EUR][1000 genomes]
rs61265151	0.94[EUR][1000 genomes]
rs62387433	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9382593	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1204158	CCDC90A	cis	lymphoblastoid	seeQTL
rs1204158	RNF182	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13826000-13829200	Enhancers	HepG2	liver
2	chr6:13827200-13827600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:13827200-13827800	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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