Variant report

Variant	rs9382593
Chromosome Location	chr6:13828363-13828364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1204156	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1204158	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1204159	1.00[CEU][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4715595	0.81[EUR][1000 genomes]
rs61265151	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62387433	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9382593	RNF182	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13826000-13829200	Enhancers	HepG2	liver
2	chr6:13827400-13829000	ZNF genes & repeats	Fetal Intestine Small	intestine
3	chr6:13827600-13828800	Enhancers	Small Intestine	intestine
4	chr6:13827800-13828600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:13827800-13829000	ZNF genes & repeats	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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