Variant report

Variant	rs1204231
Chromosome Location	chr6:13871099-13871100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13866361..13867952-chr6:13870635..13872641,2	K562	blood:
2	chr6:13862519..13866858-chr6:13869223..13874616,6	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1204190	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1204198	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1204199	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1204200	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1204201	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1204203	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1204204	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1204206	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1204212	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1204215	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1204220	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1204223	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1204245	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1204247	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1204248	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1204249	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1204251	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1204253	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1204255	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1204256	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1204257	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1204258	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1204259	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1204260	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1204261	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1204262	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1308729	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1308730	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16874389	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59038247	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6459172	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6914225	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6914405	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6937431	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs723584	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726011	0.82[AMR][1000 genomes]
rs73726013	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73726014	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13864400-13872600	Weak transcription	Placenta	Placenta
2	chr6:13865600-13873200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:13867200-13872600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:13867200-13872600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:13868400-13873400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:13869800-13871600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:13870400-13871200	Enhancers	Adipose Nuclei	Adipose
8	chr6:13870400-13871400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:13870600-13871400	Enhancers	Brain Cingulate Gyrus	brain
10	chr6:13870600-13871400	Enhancers	Fetal Muscle Leg	muscle
11	chr6:13870800-13871200	Enhancers	Fetal Brain Male	brain
12	chr6:13870800-13873600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:13870800-13873600	Weak transcription	Fetal Lung	lung
14	chr6:13871000-13871200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:13871000-13871200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:13871000-13871200	Enhancers	Brain Hippocampus Middle	brain
17	chr6:13871000-13873800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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