Variant report

Variant	rs12042786
Chromosome Location	chr1:179663834-179663835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10753200	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs4480322	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4652420	0.84[EUR][1000 genomes]
rs4652424	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs6691184	1.00[CHB][hapmap]
rs6700202	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12042786	TDRD5	cis	Nerve Tibial	GTEx
rs12042786	TDRD5	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179662600-179669600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:179663200-179664000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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