Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179553040..179558877-chr1:179559940..179564416,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227141	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12403885	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs12406197	0.83[EUR][1000 genomes]
rs1328597	0.81[EUR][1000 genomes]
rs1328598	0.81[EUR][1000 genomes]
rs1410589	0.90[CEU][hapmap]
rs1410594	0.86[CEU][hapmap];0.81[GIH][hapmap]
rs1590783	0.90[EUR][1000 genomes]
rs1887815	0.90[EUR][1000 genomes]
rs35427395	0.81[EUR][1000 genomes]
rs36057553	0.83[EUR][1000 genomes]
rs3765548	0.91[CEU][hapmap]
rs3930537	0.95[CEU][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes]
rs4651043	0.86[CEU][hapmap];0.93[YRI][hapmap]
rs4652418	0.88[EUR][1000 genomes]
rs4652424	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4652426	0.91[EUR][1000 genomes]
rs61826364	0.81[EUR][1000 genomes]
rs61826365	0.81[EUR][1000 genomes]
rs61826402	0.90[EUR][1000 genomes]
rs6691184	0.94[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10753200	TDRD5	cis	parietal	SCAN
rs10753200	ZBTB37	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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