Variant report
| Variant | rs1887815 |
|---|---|
| Chromosome Location | chr1:179551381-179551382 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10753200 | 0.90[EUR][1000 genomes] |
| rs10798689 | 0.86[YRI][hapmap] |
| rs12403885 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12406197 | 0.92[EUR][1000 genomes] |
| rs12736279 | 0.89[EUR][1000 genomes] |
| rs12736545 | 0.89[EUR][1000 genomes] |
| rs1328597 | 0.91[EUR][1000 genomes] |
| rs1328598 | 0.91[EUR][1000 genomes] |
| rs1410589 | 0.89[EUR][1000 genomes] |
| rs1590783 | 0.89[EUR][1000 genomes] |
| rs2209919 | 0.89[EUR][1000 genomes] |
| rs35427395 | 0.91[EUR][1000 genomes] |
| rs36057553 | 0.93[EUR][1000 genomes] |
| rs3754133 | 0.83[EUR][1000 genomes] |
| rs3765548 | 0.84[EUR][1000 genomes] |
| rs3930537 | 0.89[JPT][hapmap];0.83[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4652417 | 0.83[YRI][hapmap] |
| rs4652418 | 0.90[EUR][1000 genomes] |
| rs4652424 | 0.88[EUR][1000 genomes] |
| rs4652426 | 0.92[EUR][1000 genomes] |
| rs61826364 | 0.91[EUR][1000 genomes] |
| rs61826365 | 0.91[EUR][1000 genomes] |
| rs61826402 | 0.91[EUR][1000 genomes] |
| rs6673985 | 1.00[JPT][hapmap] |
| rs749960 | 0.83[YRI][hapmap] |
| rs7517766 | 0.92[YRI][hapmap] |
| rs7518557 | 0.84[YRI][hapmap] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:179551200-179552800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
