Variant report

Variant	rs12403885
Chromosome Location	chr1:179548291-179548292
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:179548160-179548310	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179546057..179548837-chr1:179552198..179554818,2	MCF-7	breast:

Variant related genes	Relation type
NPHS2	TF binding region

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10753200	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs10913752	0.88[JPT][hapmap]
rs10913753	0.88[JPT][hapmap]
rs10913766	0.88[JPT][hapmap]
rs10913767	0.88[JPT][hapmap]
rs10913769	0.86[JPT][hapmap]
rs10913809	0.90[ASN][1000 genomes]
rs11577579	0.88[JPT][hapmap]
rs11582158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11801919	0.88[JPT][hapmap]
rs11803938	0.87[CHD][hapmap];0.88[JPT][hapmap]
rs11807559	0.88[JPT][hapmap]
rs11811198	0.86[JPT][hapmap]
rs12401957	0.88[JPT][hapmap]
rs12403933	0.82[TSI][hapmap]
rs12406197	0.99[EUR][1000 genomes]
rs12722736	0.86[JPT][hapmap]
rs12724320	0.88[JPT][hapmap]
rs12724525	0.85[JPT][hapmap]
rs12724901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12726506	0.87[CHD][hapmap];0.88[JPT][hapmap]
rs12729788	0.88[JPT][hapmap]
rs12730056	0.87[CHD][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap]
rs12736279	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12736545	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12741425	0.87[CHD][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap]
rs12743018	0.88[JPT][hapmap];0.82[TSI][hapmap]
rs12744949	0.88[JPT][hapmap]
rs12744976	0.88[JPT][hapmap]
rs12746578	0.86[JPT][hapmap]
rs12747626	0.88[JPT][hapmap]
rs12749461	1.00[JPT][hapmap]
rs12753162	0.88[JPT][hapmap]
rs12753310	0.88[JPT][hapmap]
rs12757708	0.88[JPT][hapmap]
rs12757910	0.88[JPT][hapmap]
rs12758828	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12760048	0.88[JPT][hapmap]
rs1328597	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1328598	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1410589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1410594	0.86[CEU][hapmap]
rs1576224	0.84[ASN][1000 genomes]
rs1590783	0.83[EUR][1000 genomes]
rs1887815	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2209919	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34291276	0.90[ASN][1000 genomes]
rs34463289	0.90[ASN][1000 genomes]
rs35401719	0.90[ASN][1000 genomes]
rs35427395	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36057553	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3754133	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3765548	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3930537	0.95[CEU][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs4130266	0.88[JPT][hapmap]
rs4233179	0.88[JPT][hapmap]
rs4651037	0.84[ASN][1000 genomes]
rs4651043	0.86[CEU][hapmap]
rs4652418	0.83[EUR][1000 genomes]
rs4652424	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs4652426	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4652428	0.92[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs61826364	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61826365	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61826402	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6666939	0.86[JPT][hapmap]
rs7524128	0.87[CHD][hapmap];0.88[JPT][hapmap]
rs7550638	0.88[JPT][hapmap];0.85[TSI][hapmap]
rs7554103	0.88[JPT][hapmap]
rs7555895	0.86[JPT][hapmap]
rs9699789	0.90[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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