Variant report

Variant	rs1410594
Chromosome Location	chr1:179583165-179583166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179582264..179583856-chr1:179589415..179591296,2	MCF-7	breast:
2	chr1:179583016..179585935-chr1:179587596..179589374,3	K562	blood:
3	chr1:179576696..179579234-chr1:179580700..179585737,4	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10157699	1.00[CHB][hapmap];0.84[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10753200	0.86[CEU][hapmap];0.81[GIH][hapmap];0.87[EUR][1000 genomes]
rs10798704	0.95[YRI][hapmap]
rs10798708	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.97[TSI][hapmap]
rs10913847	0.85[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap]
rs11582158	0.81[CEU][hapmap]
rs12403885	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs12406197	0.81[EUR][1000 genomes]
rs12724901	0.81[CEU][hapmap]
rs12747675	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs12751914	0.81[CEU][hapmap]
rs12758828	0.81[CEU][hapmap]
rs1328595	0.86[LWK][hapmap];1.00[YRI][hapmap]
rs1328597	0.80[EUR][1000 genomes]
rs1328598	0.80[EUR][1000 genomes]
rs1410589	0.86[CEU][hapmap]
rs1590783	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1887815	0.88[EUR][1000 genomes]
rs35229401	0.82[EUR][1000 genomes]
rs35427395	0.80[EUR][1000 genomes]
rs35448215	0.85[EUR][1000 genomes]
rs36057553	0.83[EUR][1000 genomes]
rs3754133	0.81[EUR][1000 genomes]
rs3765548	0.86[CEU][hapmap]
rs3930537	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];0.83[MKK][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes]
rs4443850	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap]
rs4628468	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.93[LWK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4651043	1.00[CEU][hapmap]
rs4651044	0.88[LWK][hapmap];0.96[YRI][hapmap]
rs4652418	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4652420	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[ASN][1000 genomes]
rs4652421	0.95[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4652423	0.83[AFR][1000 genomes]
rs4652424	0.86[CEU][hapmap];0.80[GIH][hapmap];0.86[EUR][1000 genomes]
rs4652426	0.89[EUR][1000 genomes]
rs4652428	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs61826364	0.80[EUR][1000 genomes]
rs61826365	0.80[EUR][1000 genomes]
rs61826402	0.88[EUR][1000 genomes]
rs7514875	0.83[AFR][1000 genomes]
rs7534216	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.93[LWK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap]
rs7549258	1.00[YRI][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1410594	NPHS2	cis	cerebellum	SCAN
rs1410594	RASAL2	cis	parietal	SCAN
rs1410594	ZBTB37	cis	cerebellum	SCAN
rs1410594	TDRD5	cis	parietal	SCAN
rs1410594	EIF3E	trans	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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