Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:179606654-179606915	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr1:179606609-179606959	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr1:179606656-179606969	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr1:179606666-179606958	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179601476..179603491-chr1:179604853..179608456,3	MCF-7	breast:

Variant related genes	Relation type
TDRD5	TF binding region

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10798704	1.00[CHB][hapmap];0.87[YRI][hapmap]
rs10798708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913847	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs11582158	0.88[CEU][hapmap]
rs12724901	0.88[CEU][hapmap]
rs12747675	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12751914	1.00[CEU][hapmap]
rs12758828	0.88[CEU][hapmap]
rs1328595	1.00[CHB][hapmap];0.95[YRI][hapmap]
rs1410594	1.00[CHB][hapmap];0.84[JPT][hapmap];0.95[YRI][hapmap]
rs1590783	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs35229401	0.91[EUR][1000 genomes]
rs35448215	0.94[EUR][1000 genomes]
rs3930537	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs4443850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4628468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651044	1.00[CHB][hapmap];0.91[YRI][hapmap]
rs4652418	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4652420	1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs4652421	1.00[CHB][hapmap];0.95[YRI][hapmap]
rs4652428	1.00[CEU][hapmap]
rs4652430	1.00[CEU][hapmap]
rs7534216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7549258	1.00[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013000	chr1:179589193-179628536	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	esv3394963	chr1:179605329-179609927	Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv511147	chr1:179606157-179608461	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3445853	chr1:179606354-179609202	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3320865	chr1:179606743-179608492	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179604200-179607200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:179605400-179607200	Enhancers	Fetal Heart	heart
3	chr1:179606600-179607200	Enhancers	NHEK	skin

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