Variant report

Variant	rs10798704
Chromosome Location	chr1:179613262-179613263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10157699	1.00[CHB][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs10733002	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1328595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1410594	0.95[YRI][hapmap]
rs1999069	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4391629	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4422967	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4443850	0.82[CHB][hapmap];0.88[YRI][hapmap]
rs4628468	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs4651044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs4652417	0.81[AMR][1000 genomes]
rs4652421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4652423	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7514875	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7534216	0.91[YRI][hapmap]
rs7549258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013000	chr1:179589193-179628536	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links