Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179553040..179558877-chr1:179559940..179564416,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227141	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10157699	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10753200	0.88[EUR][1000 genomes]
rs12403885	0.83[EUR][1000 genomes]
rs12406197	0.82[EUR][1000 genomes]
rs12747675	0.84[EUR][1000 genomes]
rs1328597	0.81[EUR][1000 genomes]
rs1328598	0.81[EUR][1000 genomes]
rs1590783	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1887815	0.90[EUR][1000 genomes]
rs35229401	0.80[EUR][1000 genomes]
rs35427395	0.81[EUR][1000 genomes]
rs35448215	0.83[EUR][1000 genomes]
rs36057553	0.83[EUR][1000 genomes]
rs3754133	0.81[EUR][1000 genomes]
rs3930537	0.93[EUR][1000 genomes]
rs4628468	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4652420	1.00[ASN][1000 genomes]
rs4652424	0.87[EUR][1000 genomes]
rs4652426	0.89[EUR][1000 genomes]
rs61826364	0.81[EUR][1000 genomes]
rs61826365	0.81[EUR][1000 genomes]
rs61826402	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424735	chr1:179559954-179562502	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179560600-179562000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:179561400-179562000	Bivalent/Poised TSS	Fetal Kidney	kidney

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