Variant report
| Variant | rs61826402 |
|---|---|
| Chromosome Location | chr1:179569349-179569350 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:179338659..179339560-chr1:179568499..179569458,2 | MCF-7 | breast: | |
| 2 | chr1:179559457..179562076-chr1:179568845..179571260,2 | MCF-7 | breast: | |
| 3 | chr1:179569100..179571414-chr20:16483779..16486109,2 | MCF-7 | breast: | |
| 4 | chr1:179558595..179562573-chr1:179564810..179570275,6 | MCF-7 | breast: | |
| 5 | chr1:179567719..179570600-chr1:179574245..179576167,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000162782 | Chromatin interaction |
| ENSG00000261060 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10753200 | 0.90[EUR][1000 genomes] |
| rs12403885 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12406197 | 0.91[EUR][1000 genomes] |
| rs12736279 | 0.87[EUR][1000 genomes] |
| rs12736545 | 0.87[EUR][1000 genomes] |
| rs12747675 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1328597 | 0.89[EUR][1000 genomes] |
| rs1328598 | 0.89[EUR][1000 genomes] |
| rs1410589 | 0.87[EUR][1000 genomes] |
| rs1590783 | 0.90[EUR][1000 genomes] |
| rs17369945 | 0.87[ASN][1000 genomes] |
| rs1887815 | 0.91[EUR][1000 genomes] |
| rs2209919 | 0.87[EUR][1000 genomes] |
| rs35229401 | 0.83[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35427395 | 0.89[EUR][1000 genomes] |
| rs35448215 | 0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs36057553 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3754133 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3765548 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3930537 | 0.94[EUR][1000 genomes] |
| rs4652418 | 0.88[EUR][1000 genomes] |
| rs4652424 | 0.89[EUR][1000 genomes] |
| rs4652426 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61826364 | 0.89[EUR][1000 genomes] |
| rs61826365 | 0.89[EUR][1000 genomes] |
| rs61826427 | 0.87[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
