Variant report

Variant	rs2209919
Chromosome Location	chr6:66274174-66274175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10913755	0.86[ASN][1000 genomes]
rs10913760	0.86[ASN][1000 genomes]
rs10913761	0.86[ASN][1000 genomes]
rs10913762	0.86[ASN][1000 genomes]
rs10913766	0.86[ASN][1000 genomes]
rs10913767	0.86[ASN][1000 genomes]
rs10913768	0.86[ASN][1000 genomes]
rs10913769	0.86[ASN][1000 genomes]
rs10913770	0.86[ASN][1000 genomes]
rs10913771	0.86[ASN][1000 genomes]
rs10913809	1.00[ASN][1000 genomes]
rs11577579	0.86[ASN][1000 genomes]
rs11578241	0.86[ASN][1000 genomes]
rs11582158	1.00[ASN][1000 genomes]
rs11582255	0.86[ASN][1000 genomes]
rs11582293	0.86[ASN][1000 genomes]
rs11582754	0.86[ASN][1000 genomes]
rs11586744	0.80[ASN][1000 genomes]
rs11802624	0.86[ASN][1000 genomes]
rs11802625	0.86[ASN][1000 genomes]
rs11802637	0.86[ASN][1000 genomes]
rs12401957	0.86[ASN][1000 genomes]
rs12403885	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12406197	0.94[EUR][1000 genomes]
rs12408443	0.80[ASN][1000 genomes]
rs12409337	0.80[ASN][1000 genomes]
rs12722736	0.86[ASN][1000 genomes]
rs12724496	0.86[ASN][1000 genomes]
rs12724634	0.86[ASN][1000 genomes]
rs12724901	1.00[ASN][1000 genomes]
rs12729067	0.86[ASN][1000 genomes]
rs12729775	0.86[ASN][1000 genomes]
rs12736279	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12736545	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12738929	0.86[ASN][1000 genomes]
rs12739116	0.86[ASN][1000 genomes]
rs12744251	0.86[ASN][1000 genomes]
rs12750591	0.86[ASN][1000 genomes]
rs12757935	0.80[ASN][1000 genomes]
rs12758415	0.80[ASN][1000 genomes]
rs1328597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1328598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410589	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576224	0.93[ASN][1000 genomes]
rs1887815	0.89[EUR][1000 genomes]
rs34291276	1.00[ASN][1000 genomes]
rs34463289	1.00[ASN][1000 genomes]
rs35401719	1.00[ASN][1000 genomes]
rs35427395	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36057553	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3754133	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3765548	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3930537	0.85[EUR][1000 genomes]
rs4130266	0.86[ASN][1000 genomes]
rs4360491	0.80[ASN][1000 genomes]
rs4418554	0.80[ASN][1000 genomes]
rs4454499	0.86[ASN][1000 genomes]
rs4651028	0.86[ASN][1000 genomes]
rs4651037	0.93[ASN][1000 genomes]
rs4652426	0.88[EUR][1000 genomes]
rs61821011	0.86[ASN][1000 genomes]
rs61826364	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61826365	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61826402	0.87[EUR][1000 genomes]
rs7513782	0.80[ASN][1000 genomes]
rs7513973	0.80[ASN][1000 genomes]
rs7532155	0.86[ASN][1000 genomes]
rs7551894	0.80[ASN][1000 genomes]
rs7554103	0.80[ASN][1000 genomes]
rs9662026	0.80[ASN][1000 genomes]
rs9699789	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886012	chr6:65905998-66354809	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886029	chr6:66133281-66333105	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2763559	chr6:66201093-66360660	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv603442	chr6:66221979-66321544	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1027386	chr6:66232296-66291442	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv470825	chr6:66269399-66326945	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:66268400-66277600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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