Variant report

Variant	rs3765548
Chromosome Location	chr1:179542486-179542487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10753200	0.91[CEU][hapmap]
rs10913739	0.85[CHD][hapmap]
rs10913809	0.90[ASN][1000 genomes]
rs11582158	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs11803938	0.85[CHD][hapmap]
rs12403885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12406197	0.89[EUR][1000 genomes]
rs12724901	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs12726506	0.85[CHD][hapmap]
rs12730056	0.85[CHD][hapmap]
rs12736279	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12736545	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12741425	0.85[CHD][hapmap]
rs12747675	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs12749461	0.86[JPT][hapmap]
rs12751914	0.88[JPT][hapmap]
rs12758828	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1328597	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1328598	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1410589	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1410594	0.86[CEU][hapmap]
rs1576224	0.83[ASN][1000 genomes]
rs17369945	0.81[ASN][1000 genomes]
rs1887815	0.84[EUR][1000 genomes]
rs2209919	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34291276	0.90[ASN][1000 genomes]
rs34463289	0.90[ASN][1000 genomes]
rs35401719	0.90[ASN][1000 genomes]
rs35427395	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35448215	0.83[ASN][1000 genomes]
rs36057553	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3754133	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3930537	0.95[CEU][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs4651037	0.83[ASN][1000 genomes]
rs4651043	0.86[CEU][hapmap]
rs4652424	0.91[CEU][hapmap]
rs4652426	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4652428	0.82[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap]
rs4652430	0.88[JPT][hapmap]
rs61826364	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61826365	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61826402	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61826427	0.81[ASN][1000 genomes]
rs7524128	0.85[CHD][hapmap]
rs7550638	0.82[TSI][hapmap]
rs9699789	0.90[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs3765548	AXDND1	cis	Thyroid	GTEx
rs3765548	ZBTB37	cis	cerebellum	SCAN
rs3765548	RASAL2	cis	parietal	SCAN
rs3765548	TDRD5	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179541200-179543200	Active TSS	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links