Variant report
| Variant | rs4652428 |
|---|---|
| Chromosome Location | chr1:179598763-179598764 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10157699 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs10798708 | 1.00[CEU][hapmap];0.87[TSI][hapmap] |
| rs10798711 | 0.80[EUR][1000 genomes] |
| rs10913847 | 1.00[CEU][hapmap] |
| rs11582158 | 0.89[CEU][hapmap] |
| rs12403885 | 0.92[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap] |
| rs12724901 | 0.89[CEU][hapmap] |
| rs12747675 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12751914 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12758828 | 0.89[CEU][hapmap] |
| rs1410594 | 0.81[CEU][hapmap];0.84[TSI][hapmap] |
| rs17369945 | 0.97[ASN][1000 genomes] |
| rs35229401 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs35448215 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36057553 | 0.81[ASN][1000 genomes] |
| rs3765548 | 0.82[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.83[ASN][1000 genomes] |
| rs4443850 | 1.00[CEU][hapmap] |
| rs4628468 | 1.00[CEU][hapmap];0.86[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs4651043 | 0.81[CEU][hapmap] |
| rs4652418 | 0.84[EUR][1000 genomes] |
| rs4652426 | 0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4652430 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs61826402 | 0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61826427 | 0.97[ASN][1000 genomes] |
| rs7534216 | 1.00[CEU][hapmap];0.87[TSI][hapmap] |
| rs7550638 | 0.82[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013000 | chr1:179589193-179628536 | Enhancers Weak transcription Bivalent Enhancer | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
mRNA abundance (count:4)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4652428 | TDRD5 | cis | parietal | SCAN |
| rs4652428 | NPHS2 | cis | cerebellum | SCAN |
| rs4652428 | EIF3E | trans | cerebellum | SCAN |
| rs4652428 | ZBTB37 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
