Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179420955..179423707-chr1:179426882..179428656,2	K562	blood:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10913752	0.82[TSI][hapmap]
rs10913753	0.82[TSI][hapmap]
rs10913766	0.82[TSI][hapmap]
rs10913767	0.82[TSI][hapmap]
rs10913847	0.83[CEU][hapmap]
rs11577579	0.82[TSI][hapmap]
rs11582158	0.89[CEU][hapmap]
rs12401957	0.82[TSI][hapmap]
rs12403885	0.82[TSI][hapmap]
rs12724901	0.89[CEU][hapmap]
rs12729067	0.93[EUR][1000 genomes]
rs12729788	0.84[CEU][hapmap]
rs12730056	0.84[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs12741425	0.84[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs12743018	0.84[CEU][hapmap];0.84[GIH][hapmap];0.81[LWK][hapmap];0.94[TSI][hapmap]
rs12744976	0.82[TSI][hapmap]
rs12751550	0.81[EUR][1000 genomes]
rs12755634	0.81[EUR][1000 genomes]
rs12756624	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs12758828	0.89[CEU][hapmap]
rs1329276	0.87[ASW][hapmap]
rs1410589	1.00[JPT][hapmap]
rs1576224	0.84[EUR][1000 genomes]
rs2274621	0.83[CHB][hapmap]
rs4130266	0.82[TSI][hapmap]
rs4360491	0.93[EUR][1000 genomes]
rs4651028	0.82[TSI][hapmap]
rs4651037	0.84[EUR][1000 genomes]
rs4652368	0.81[EUR][1000 genomes]
rs7550638	0.84[CEU][hapmap];0.84[GIH][hapmap];0.97[TSI][hapmap]
rs7555722	0.84[CEU][hapmap]
rs7555895	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819329	chr1:179371973-179442337	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv548298	chr1:179376896-179436288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
5	nsv946523	chr1:179417249-179426389	Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv1009624	chr1:179423063-179459676	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs12403933	FIGF	trans	cerebellum	SCAN
rs12403933	ZBTB37	cis	cerebellum	SCAN
rs12403933	NPHS2	cis	cerebellum	SCAN
rs12403933	LHX4	cis	parietal	SCAN
rs12403933	TOR1AIP1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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