Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179465791..179468521-chr1:179470887..179473606,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10494520	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs10798670	0.88[CHB][hapmap]
rs10913733	0.88[CHB][hapmap]
rs10913806	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073970	0.93[CHB][hapmap]
rs12097041	0.88[CHB][hapmap]
rs12120123	0.88[CHB][hapmap]
rs12120740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130876	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs12131473	0.85[CHB][hapmap]
rs12131475	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs12134114	0.88[CHB][hapmap]
rs12138436	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs12138619	0.87[CHB][hapmap]
rs12403933	0.87[ASW][hapmap]
rs12405133	0.88[CHB][hapmap]
rs12405321	0.88[CHB][hapmap]
rs12408477	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs12725126	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs12740455	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs12745772	0.88[CHB][hapmap];0.81[CHD][hapmap]
rs12759446	0.91[CHB][hapmap]
rs13306731	0.88[CHB][hapmap]
rs13374852	0.88[CHB][hapmap]
rs16854009	0.81[CHB][hapmap]
rs16854229	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs2149399	0.88[GIH][hapmap]
rs4077551	0.88[CHB][hapmap]
rs4077552	0.88[CHB][hapmap]
rs4111170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4111172	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4133136	0.87[CHB][hapmap]
rs6669967	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs7551440	0.88[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1820823	chr1:179455645-179479803	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1832000	chr1:179467663-179474053	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1329276	NPHS2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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